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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7530424_7536524_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7530424 - 7536524
Intron Length:
6101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGCGTGTG
5'SS Class:
major
3'SS Sequence:
TTTATTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTCCTTTATT
Flanking Amino Acid:
LKIWKSRSCAGISGKSQLLF
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
63.7
42.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.5
0.66
0.9
78
36.4
Minor 5ss
30.3
-2.3
3.4
40.1
45.9
Minor BPS
76.9
0.93
1.5
90.44
33

Associated Gene:

Gene:
KDELR2
Ensembl Gene ID:
ENSAPLG00000002978
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003025
7525121 - 7536615
11495