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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_754922_758408_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
754922 - 758408
Intron Length:
3487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
GGGATCTGAAGG
Flanking Amino Acid:
AREEPSFRAPGTFRGVCKKI
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
76.6
0.6
0.9
73.7
36.9
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
43.8
-0.6
1.8
42.22
42.3

Associated Gene:

Gene:
CACNG3
Ensembl Gene ID:
ENSAPLG00000018170
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019763
751908 - 758889
6982