About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7553444_7557920_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7553444 - 7557920
Intron Length:
4477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTTTTTATT
5'SS Class:
weak_major
3'SS Sequence:
GGAAAACTCTTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGGTGAA
U12 Branch Point Sequence:
GTCTCCTTGAGG
Flanking Amino Acid:
GELNVLAEKVLFHFFFPDCL
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.3
0.17
1.3
70.5
39
Major BPS
56.9
0.17
1.3
49.1
46.3
Major PPT
50.6
0.01
1
44.4
42
Minor 5ss
46.6
-0.3
2.5
66.1
37.7
Minor BPS
60.5
0.19
1.8
63.23
44.9

Associated Gene:

Gene:
OTOA
Ensembl Gene ID:
ENSAPLG00000004657
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004791
7541365 - 7572441
31077