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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7562028_7562069_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7562028 - 7562069
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
AGCGCATCCATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTACATTTTACT
Flanking Amino Acid:
SIPPFLLLVLPRTFAVLCQQ
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.3
69.7
37.9
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
55.2
0.12
0.9
46.9
35.1
Minor 5ss
42.4
-0.8
2.8
57.1
40.8
Minor BPS
54
0.21
1.8
75.55
40.5

Associated Gene:

Gene:
OTOA
Ensembl Gene ID:
ENSAPLG00000004657
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004791
7541365 - 7572441
31077