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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7562585_7562914_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7562585 - 7562914
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
CTTTCCCTATCA
Flanking Amino Acid:
SKKSSPVDLLSTGQLVKGVT
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.1
40.7
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
79.5
0.66
0.8
78.4
28.8
Minor 5ss
42
-0.9
3.1
56.4
48
Minor BPS
60.4
0.32
2
76.04
41.3

Associated Gene:

Gene:
OTOA
Ensembl Gene ID:
ENSAPLG00000004657
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004791
7541365 - 7572441
31077