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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7562971_7563563_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7562971 - 7563563
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CAATGTTTAACT
Flanking Amino Acid:
MKEKELRRSQALYLYKLLSK
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.8
0.85
0.8
85.7
33.4
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
61
0.42
1.8
73.6
43.3

Associated Gene:

Gene:
OTOA
Ensembl Gene ID:
ENSAPLG00000004657
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004791
7541365 - 7572441
31077