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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7563705_7564020_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7563705 - 7564020
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTGTG
5'SS Class:
major
3'SS Sequence:
TTCCGCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AGTTCTGAAATG
Flanking Amino Acid:
PAQQQGILRKMASSRDFSSP
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.2
67.3
44.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
79
0.65
0.8
76.9
31.8
Minor 5ss
40.8
-1
3.4
57.9
46.7
Minor BPS
45.1
-0.5
2.2
53.72
42.1

Associated Gene:

Gene:
OTOA
Ensembl Gene ID:
ENSAPLG00000004657
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004791
7541365 - 7572441
31077