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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7564186_7564723_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7564186 - 7564723
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTCTG
5'SS Class:
major
3'SS Sequence:
GTTATGTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACACAA
U12 Branch Point Sequence:
TTCTCTGTTATG
Flanking Amino Acid:
LSSKYLSYEKVLFYNISQMG
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.2
65.3
46
Major BPS
60.7
0.27
1
67.2
29.6
Major PPT
76.7
0.6
1
69.7
41.4
Minor 5ss
49.5
-0
2.5
67.2
43.9
Minor BPS
46.5
-0.4
2.3
58.34
44.1

Associated Gene:

Gene:
OTOA
Ensembl Gene ID:
ENSAPLG00000004657
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004791
7541365 - 7572441
31077