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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7565505_7567962_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7565505 - 7567962
Intron Length:
2458

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATTTCAGAAGC
Flanking Amino Acid:
FDMRNTSTIYRLGLLVCFYD
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.9
74.7
41.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78
0.63
0.8
73.7
30.4
Minor 5ss
25.3
-2.8
4
38.3
46.6
Minor BPS
48.4
-0.1
2
65.23
39.9

Associated Gene:

Gene:
OTOA
Ensembl Gene ID:
ENSAPLG00000004657
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004791
7541365 - 7572441
31077