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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7568103_7568548_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7568103 - 7568548
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGCATTGATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTGCATTGATC
Flanking Amino Acid:
EEILKISLNEIRLFISYDNA
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
67
0.38
1.1
66.5
43.7
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
61.6
0.35
1.7
74.7
36.3

Associated Gene:

Gene:
OTOA
Ensembl Gene ID:
ENSAPLG00000004657
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004791
7541365 - 7572441
31077