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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7570465_7570665_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7570465 - 7570665
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGCCAT
5'SS Class:
major
3'SS Sequence:
TTGTGTCACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AATTAGTGAATT
Flanking Amino Acid:
KVLQEDAFRNLSTVFKDLYD
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
63.6
42.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
68.1
0.41
0.9
66.9
39.6
Minor 5ss
42.1
-0.9
3.2
62.5
43.1
Minor BPS
47.3
-0.1
2.2
69.79
40.8

Associated Gene:

Gene:
OTOA
Ensembl Gene ID:
ENSAPLG00000004657
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004791
7541365 - 7572441
31077