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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7581302_7591933_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7581302 - 7591933
Intron Length:
10632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTTTTATAACT
Flanking Amino Acid:
VLPFHPYVENVGGKWEKPSE
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89
0.88
0.7
88.3
28.7
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
68.3
0.65
1.6
85.23
34.7

Associated Gene:

Gene:
METTL9
Ensembl Gene ID:
ENSAPLG00000004648
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004770
7581096 - 7600163
19068