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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7593373_7595644_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7593373 - 7595644
Intron Length:
2272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTACCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATCTTTACCT
Flanking Amino Acid:
SLFMSRTSINGLLGRGSMFV
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.7
0.78
0.8
81.4
30.3
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
67.8
0.64
1.6
80.24
42

Associated Gene:

Gene:
METTL9
Ensembl Gene ID:
ENSAPLG00000004648
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004770
7581096 - 7600163
19068