Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7614877_7616365_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7614877 - 7616365

Intron Length:

1489

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGCAAG

5'SS Class:

major

3'SS Sequence:

TGTCTTCCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

AAGATCTTAATT

Flanking Amino Acid:

YLLAFYLTTNMVIVQASFSL

Intron Amino Acid Position:

350

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

1.1

70.9

40.9

Major BPS

90.4

0.7

90.2

19.3

Major PPT

0.68

0.8

78.2

30.7

Minor 5ss

41.2

-1

2.9

53.3

43.9

Minor BPS

65.1

0.55

1.3

71.94

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004542

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004675

7606911 - 7622726

15816