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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7624257_7628786_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7624257 - 7628786
Intron Length:
4530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
GTGTCCGTAACG
Flanking Amino Acid:
PWYDQQDLQQDLHLAAELGK
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
66.4
0.41
1
61.3
37
Major PPT
82.8
0.74
0.7
81.2
30
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
60.6
0.19
2.1
68.02
45.3

Associated Gene:

Gene:
CDR2
Ensembl Gene ID:
ENSAPLG00000004288
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004401
7624178 - 7634857
10680