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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7628900_7632218_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7628900 - 7632218
Intron Length:
3319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TATTGTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAA
U12 Branch Point Sequence:
AGACTAGTAACA
Flanking Amino Acid:
TNQEQLQEIEYLTKQVELLR
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
65.2
0.38
1.2
69.6
37.5
Major PPT
83.6
0.76
0.8
77.5
36.5
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
43.7
-0.4
2.1
54.09
37.5

Associated Gene:

Gene:
CDR2
Ensembl Gene ID:
ENSAPLG00000004288
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004401
7624178 - 7634857
10680