About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7632368_7632639_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7632368 - 7632639
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAAAC
5'SS Class:
major
3'SS Sequence:
CCTTCACTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AATGTTTTAACA
Flanking Amino Acid:
ESRASQQKILSLTETIENLQ
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
75.1
35.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.8
0.6
0.8
74
29.9
Minor 5ss
39.3
-1.2
2.9
51.9
44.9
Minor BPS
66.2
0.5
1.3
70.12
36.2

Associated Gene:

Gene:
CDR2
Ensembl Gene ID:
ENSAPLG00000004288
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004401
7624178 - 7634857
10680