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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7632805_7633989_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7632805 - 7633989
Intron Length:
1185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGACTC
5'SS Class:
major
3'SS Sequence:
TTTGTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GATTTCATAATA
Flanking Amino Acid:
SCLKELYDLRQYFVYDHVFA
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
64
40.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
89.5
0.89
0.7
85
29.8
Minor 5ss
38.7
-1.3
3.3
57.5
40.7
Minor BPS
61.8
0.37
1.6
70.13
35.7

Associated Gene:

Gene:
CDR2
Ensembl Gene ID:
ENSAPLG00000004288
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004401
7624178 - 7634857
10680