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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7641049_7642016_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7641049 - 7642016
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGCA
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTGAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTATATTAATT
Flanking Amino Acid:
LWEAGDTYDQHRQVLLEIFS
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.1
35.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.3
0.7
0.9
83.5
25.2
Minor 5ss
28.9
-2.4
3.5
38.8
46.5
Minor BPS
68.2
0.65
1.6
85.62
34.2

Associated Gene:

Gene:
POLR3E
Ensembl Gene ID:
ENSAPLG00000003834
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003981
7638656 - 7660937
22282