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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7648611_7648907_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7648611 - 7648907
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATTAC
5'SS Class:
major
3'SS Sequence:
CTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAA
U12 Branch Point Sequence:
TATTGGTGTATT
Flanking Amino Acid:
QHMLWMGIQAKLEKVYNLLK
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
74.5
29.7
Major BPS
53
0.08
1
61.4
34.3
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
41.6
-0.9
2.9
52.2
39.3
Minor BPS
40.8
-0.6
2.6
65.53
45.3

Associated Gene:

Gene:
POLR3E
Ensembl Gene ID:
ENSAPLG00000003834
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003981
7638656 - 7660937
22282