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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7656831_7657130_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7656831 - 7657130
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATGTCCA
5'SS Class:
major
3'SS Sequence:
CAAAATCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
GATATCAAAATC
Flanking Amino Acid:
EAEDDVKQITVRFSRPETEQ
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.1
57.6
41.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
61.9
0.27
1
51.3
43
Minor 5ss
43.5
-0.7
2.8
60.7
43.6
Minor BPS
44.7
-0.4
1.8
53.69
37.8

Associated Gene:

Gene:
POLR3E
Ensembl Gene ID:
ENSAPLG00000003834
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003981
7638656 - 7660937
22282