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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7657181_7657649_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7657181 - 7657649
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTGTTTTTATCC
Flanking Amino Acid:
KHREREAANEGGDSSQDEAE
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80
0.67
1
77.1
37.1
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
58.7
0.25
1.6
66.09
40

Associated Gene:

Gene:
POLR3E
Ensembl Gene ID:
ENSAPLG00000003834
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003981
7638656 - 7660937
22282