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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7657758_7658476_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7657758 - 7658476
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTTCA
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATAATTTTAACT
Flanking Amino Acid:
SRYAAAVYRKGELHLTPLHG
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
73.7
33.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
40.6
-1.1
2.7
50.7
45.7
Minor BPS
69.9
0.7
1.2
79.63
36

Associated Gene:

Gene:
POLR3E
Ensembl Gene ID:
ENSAPLG00000003834
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003981
7638656 - 7660937
22282