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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7674361_7675721_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7674361 - 7675721
Intron Length:
1361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTGC
5'SS Class:
major
3'SS Sequence:
TTTTTAACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGATTTTTAACT
Flanking Amino Acid:
YDTGVNLGSDRAQDWKEALY
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
57.8
42.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.7
0.8
0.8
83.3
31.9
Minor 5ss
36.1
-1.6
3.4
50.8
45.8
Minor BPS
77.2
0.93
1.1
85.13
34.9

Associated Gene:

Gene:
EEF2K
Ensembl Gene ID:
ENSAPLG00000003456
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003566
7673415 - 7694317
20903