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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7676951_7679120_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7676951 - 7679120
Intron Length:
2170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTGCATGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TATTTTGGAATA
Flanking Amino Acid:
ELEDLDHRDRISVEKWNLYN
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.5
37.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
76.4
0.59
1
73.1
41.8
Minor 5ss
34.3
-1.8
2.9
37.3
39.7
Minor BPS
48.2
-0.1
2
64.45
36.4

Associated Gene:

Gene:
EEF2K
Ensembl Gene ID:
ENSAPLG00000003456
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003566
7673415 - 7694317
20903