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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7682076_7683904_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7682076 - 7683904
Intron Length:
1829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGGCTT
5'SS Class:
major
3'SS Sequence:
TGCTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTTTCTCAGACA
Flanking Amino Acid:
RDDNIRLTPQAFSHFTFERS
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
72.3
38.9
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
83.9
0.76
0.8
81
31
Minor 5ss
33
-1.9
3.5
47.7
42.3
Minor BPS
54
0.12
2
74.9
36.7

Associated Gene:

Gene:
EEF2K
Ensembl Gene ID:
ENSAPLG00000003456
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003566
7673415 - 7694317
20903