About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7689730_7691500_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7689730 - 7691500
Intron Length:
1771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTACG
5'SS Class:
major
3'SS Sequence:
ACTGATTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CTGATTGTAACT
Flanking Amino Acid:
DIETEHATRYRYNAVTGNWV
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
68
42.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
72.3
0.5
0.9
65.9
40
Minor 5ss
37.6
-1.4
2.4
43.7
43.5
Minor BPS
48.6
-0
2
67.23
44.2

Associated Gene:

Gene:
EEF2K
Ensembl Gene ID:
ENSAPLG00000003456
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003566
7673415 - 7694317
20903