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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7691602_7694071_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7691602 - 7694071
Intron Length:
2470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTATCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TCTTCTGTAAAT
Flanking Amino Acid:
SSPRNSFSFKETWKHAIEKA
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
80.5
0.69
0.9
77.6
36.5
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
59.2
0.37
2.1
80.63
41.5

Associated Gene:

Gene:
EEF2K
Ensembl Gene ID:
ENSAPLG00000003456
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003566
7673415 - 7694317
20903