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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7707478_7708102_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7707478 - 7708102
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTAG
5'SS Class:
major
3'SS Sequence:
ACCTCTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTCTTTACCT
Flanking Amino Acid:
ALTPEKNYIASGQVYFINDG
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
68.3
39.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
73.6
0.53
0.9
69
35.2
Minor 5ss
42.5
-0.8
2.9
59.1
45.3
Minor BPS
73.7
0.82
1.6
87.23
39

Associated Gene:

Gene:
SDR42E2
Ensembl Gene ID:
ENSAPLG00000003241
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003305
7707358 - 7717797
10440