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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7708241_7710041_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7708241 - 7710041
Intron Length:
1801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TTTATGTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTTGTTTTATGT
Flanking Amino Acid:
EEQRHLPRLAKNIERGLLSF
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
77.6
36.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
83
0.74
0.9
76.7
37.4
Minor 5ss
50
-0
2.5
74.1
35.5
Minor BPS
50.6
0.1
2
74.38
43.4

Associated Gene:

Gene:
SDR42E2
Ensembl Gene ID:
ENSAPLG00000003241
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003305
7707358 - 7717797
10440