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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7710125_7711648_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7710125 - 7711648
Intron Length:
1524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTTG
5'SS Class:
major
3'SS Sequence:
TCAATTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
GTTTTATCAATT
Flanking Amino Acid:
VLAANGTPLAGGGILYTCVL
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
71.8
40.6
Major BPS
79
0.72
1
80.3
31.7
Major PPT
74.2
0.55
0.9
66.1
40.5
Minor 5ss
42.8
-0.8
3
58.4
46.1
Minor BPS
57.6
0.32
1.8
78.05
38.2

Associated Gene:

Gene:
SDR42E2
Ensembl Gene ID:
ENSAPLG00000003241
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003305
7707358 - 7717797
10440