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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7711725_7712650_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7711725 - 7712650
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTGG
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
ATACATACAAAC
Flanking Amino Acid:
ETVPYFPIEKHVDHYSRTKS
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
64.2
42.4
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
89.1
0.88
0.6
85.8
21.3
Minor 5ss
45.8
-0.4
2.5
58.8
45.7
Minor BPS
39.3
-0.8
1.8
47.45
34.2

Associated Gene:

Gene:
SDR42E2
Ensembl Gene ID:
ENSAPLG00000003241
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003305
7707358 - 7717797
10440