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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7712770_7713492_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7712770 - 7713492
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTATC
5'SS Class:
strong_major
3'SS Sequence:
TATATTGCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTACTTTATAT
Flanking Amino Acid:
NINGTRFIIDACKQRNISRL
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.73
1
77.9
36.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
71.7
0.49
1
65.2
40.8
Minor 5ss
39
-1.2
3.1
50.7
40.4
Minor BPS
62.2
0.46
1.7
82.02
39.2

Associated Gene:

Gene:
SDR42E2
Ensembl Gene ID:
ENSAPLG00000003241
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003305
7707358 - 7717797
10440