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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7713551_7714559_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7713551 - 7714559
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ATTTCTTCATTT
Flanking Amino Acid:
ASYGMSGREQLHREEIETVN
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
27.6
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
79
0.65
0.8
72.8
37.3
Minor 5ss
36.7
-1.5
2.8
41.8
38.8
Minor BPS
58.3
0.34
1.8
78.39
38.4

Associated Gene:

Gene:
SDR42E2
Ensembl Gene ID:
ENSAPLG00000003241
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003305
7707358 - 7717797
10440