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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7758778_7759751_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7758778 - 7759751
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGCTACTGATTT
Flanking Amino Acid:
LTTGIPDQETHLISTYVAEA
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
96.2
1.04
0.5
92.4
17.6
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
48
-0
1.9
66.65
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002824
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002874
7756981 - 7770492
13512