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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7759897_7760591_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7759897 - 7760591
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATGA
5'SS Class:
strong_major
3'SS Sequence:
AACTTATTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TCTAGATTAATT
Flanking Amino Acid:
SQPENLQKAWRWVLSLQCRG
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
39.1
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
69.3
0.43
0.9
66.7
38.7
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
51.8
0.14
2.1
73.63
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002824
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002874
7756981 - 7770492
13512