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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7761665_7763135_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7761665 - 7763135
Intron Length:
1471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TGTTTCTTACAC
Flanking Amino Acid:
RRIWGNVYEKRVVILVDISA
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.4
33.4
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
77.5
0.62
0.9
72.7
36.6
Minor 5ss
44.5
-0.6
3.2
63.6
48.1
Minor BPS
61
0.33
1.7
71.98
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002824
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002874
7756981 - 7770492
13512