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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7763231_7765095_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7763231 - 7765095
Intron Length:
1865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTCTATATTT
Flanking Amino Acid:
VDLPVLYNYQKLLAKMVRIY
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.3
0.64
0.8
73.5
35.7
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
54.5
0.22
1.9
76.24
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002824
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002874
7756981 - 7770492
13512