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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7765177_7765411_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7765177 - 7765411
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTATCT
Flanking Amino Acid:
QKTVSSTLHEKVMMQFEWHD
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.16
0.7
89.3
28.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.8
0.78
0.7
77.8
36.5
Minor 5ss
24
-3
4
39.6
46.4
Minor BPS
63.3
0.5
1.8
82.18
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002824
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002874
7756981 - 7770492
13512