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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7765516_7765604_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7765516 - 7765604
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCACAG
5'SS Class:
major
3'SS Sequence:
TTCCTTGCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATG
Flanking Amino Acid:
TDWLKTNGLKAKKLNLYQVL
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.3
53.4
45.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.4
0.62
0.8
73.1
31.8
Minor 5ss
35.5
-1.7
3.4
46.9
48.4
Minor BPS
71.8
0.55
1.5
76.08
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002824
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002874
7756981 - 7770492
13512