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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7777446_7785994_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7777446 - 7785994
Intron Length:
8549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
KYARWIAFTGMILFCMAALI
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.7
0.89
0.7
84.8
28.7
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
MOSMO
Ensembl Gene ID:
ENSAPLG00000002716
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002738
7777261 - 7804357
27097