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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7811011_7812005_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7811011 - 7812005
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGAAAC
5'SS Class:
major
3'SS Sequence:
TGTATCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TAATCCCACATT
Flanking Amino Acid:
PEVKLPVMTEDTSEDTEDED
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
68.8
36.3
Major BPS
73.9
0.59
1
81
30.2
Major PPT
81.5
0.71
0.9
77.8
36.5
Minor 5ss
35
-1.7
3
40.5
39.4
Minor BPS
44.6
-0.3
2.3
66.64
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002708
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002730
7807890 - 7812324
4435