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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7816299_7816573_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7816299 - 7816573
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAGAT
U12 Branch Point Sequence:
GCTACTTGAAAC
Flanking Amino Acid:
VAKATTQPFDASAFNVNYSD
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
62.6
0.31
1
58.7
38.1
Major PPT
87.2
0.84
0.8
84.6
36
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
49.8
-0
1.6
58.21
40.1

Associated Gene:

Gene:
UQCRC2
Ensembl Gene ID:
ENSAPLG00000002008
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002236
7813061 - 7821823
8763