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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7818596_7819112_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7818596 - 7819112
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTGTA
5'SS Class:
major
3'SS Sequence:
TTGTTCCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
TAGTCATAAACT
Flanking Amino Acid:
KAIAFQNPQVGVLENLHAAA
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.2
36.5
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
78.9
0.65
0.8
77.9
30.9
Minor 5ss
35
-1.7
3.5
45.3
45.2
Minor BPS
59.5
0.38
2
78.47
43.4

Associated Gene:

Gene:
UQCRC2
Ensembl Gene ID:
ENSAPLG00000002008
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002236
7813061 - 7821823
8763