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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7819625_7821360_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7819625 - 7821360
Intron Length:
1736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATATGG
5'SS Class:
major
3'SS Sequence:
TACTCAACGAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
TLLTCMTSKREKMTYSVECL
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
61.4
40
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
45.7
-0.2
1.7
47.6
39.2
Minor 5ss
32
-2.1
3
39
46.1
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
UQCRC2
Ensembl Gene ID:
ENSAPLG00000002008
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002236
7813061 - 7821823
8763