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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7821386_7821436_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7821386 - 7821436
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
AAATGGTGGGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTACTAT
U12 Branch Point Sequence:
TTTTTGGCAATG
Flanking Amino Acid:
AHLLRLASTLLTCMTSKREK
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
82.9
29.8
Major BPS
62.1
0.3
1.4
61.1
45
Major PPT
45.1
-0.2
1.2
37.7
43.6
Minor 5ss
45.6
-0.5
3
63.7
43.1
Minor BPS
42
-0.7
2.6
58.48
44.1

Associated Gene:

Gene:
UQCRC2
Ensembl Gene ID:
ENSAPLG00000002008
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002236
7813061 - 7821823
8763