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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7821587_7821694_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7821587 - 7821694
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTATTTTAATG
Flanking Amino Acid:
KLSPESEDLEITKLPNGLVI
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.8
0.67
0.9
75.1
38.4
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
69.2
0.47
1.3
71.2
36.4

Associated Gene:

Gene:
UQCRC2
Ensembl Gene ID:
ENSAPLG00000002008
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002236
7813061 - 7821823
8763