About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7824025_7824246_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7824025 - 7824246
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGAGA
5'SS Class:
major
3'SS Sequence:
TCCTCTTTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TCCTCTTTGAAA
Flanking Amino Acid:
RAVVPVRPHGGYLGVMPAYS
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
65.7
41.7
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
66.4
0.37
1.1
69.7
34.5
Minor 5ss
25.7
-2.8
2.9
22.2
37.3
Minor BPS
62.1
0.37
1.4
66.79
40.1

Associated Gene:

Gene:
CRYM
Ensembl Gene ID:
ENSAPLG00000029698
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041344
7820515 - 7827991
7477