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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7839290_7842470_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7839290 - 7842470
Intron Length:
3181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGTAT
U12 Branch Point Sequence:
TCTGTGCTATTT
Flanking Amino Acid:
LEALEVICRRGGDPDKCDIW
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
59.2
0.23
1.4
61.1
45.5
Major PPT
85.4
0.8
0.6
85.2
22.2
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
39.3
-0.7
2.4
59.08
45.1

Associated Gene:

Gene:
ANKS4B
Ensembl Gene ID:
ENSAPLG00000000958
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000945
7838239 - 7842634
4396