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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_7849019_7849348_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7849019 - 7849348
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTACTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
TGTTGTCTAACT
Flanking Amino Acid:
ATNCTKDFMAVTFPRLIPSF
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
85.8
0.81
0.7
84.5
30.2
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
57.3
0.31
2.1
81.32
40.3

Associated Gene:

Gene:
ZP2
Ensembl Gene ID:
ENSAPLG00000016302
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017017
7847562 - 7853241
5680